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Register Now for Virtual Crash Course: Using KBase to access PDB Structures and CSMs
10/21
Learn about the protein structure-related tools, visualizations, and workflows that have been integrated into KBase on Thursday November 10, 2022 (1:00 - 5:00 pm EDT).
Registration is required for the Zoom meeting information, but attendance is at no charge.
Please sign up at https://go.rutgers.edu/xfudv6m4.
1:00–1:05 PM
Welcome and Introduction
Stephen K. Burley, M.D., D.Phil., Director, RCSB PDB
1:05–1:20 PM
Review of Joint DOE KBase/RCSB PDB Crash Course Objectives
Christopher Henry, Ph.D., KBase, Argonne National Laboratory
1:20–2:00 PM
Protein Candidates from Function Queries in KBase
Janaka N. Edirisinghe, Ph.D. - KBase, Argonne National Laboratory
2:00–2:30 PM
Accessing Experimental Structures from the PDB
Dennis Piehl, Ph.D., RCSB PDB
2:30-3:00 PM
Accessing Computed Structure Models generated using AlphaFold2 or RoseTTAFold(2)
Brinda Vallat, Ph.D., RCSB PDB
3:00-3:15 PM
Break
3:15–3:45 PM
Introduction to Mol* Molecular Graphics System
Shuchismita Dutta, Ph.D., RCSB PDB
3:45-4:15 PM
Viewing Protein Structures in KBase with Mol*
Qizhi Zhang, Ph.D. - KBase, Argonne National Laboratory
4:15-4:45 PM
Making the Best use of Protein Structure Data in KBase and PDB
Christopher Henry, Ph.D,, KBase
Co-organizers
Stephen K. Burley (RCSB PDB Protein Data Bank, Rutgers University) and Christopher Henry (Systems Biology Knowledgebase, Argonne National Laboratory).