Education Corner: Fundamentals of Biochemistry

02/07 

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In the Winter 2023 Newsletter, Henry Jakubowski (Professor Emeritus, College of St. Benedict/St. John’s University) describes a new online biochemistry textbook with interactive molecular and mathematical modeling.

Fundamentals of Biochemistry is part of the LibreText initiative to provide free online textbooks for all chemistry courses in the undergraduate curriculum.

Other articles in this issue focus on the 1D-3D Group Alignment Viewer; New Video: How Neurons Communicate; and more.

Published quarterly, each Education Corner describes of how community members use the PDB and related resources.
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News Index

• 12/26 Peak Performance for 2024

• 12/21 Season's Greetings

• 12/19 Celebrate #NationalCrosswordDay with Sequence Events

• 12/18 wwPDB News: Improved Depositor Experience Using ORCiD

• 12/18 Molecular Origami: Green and Red Fluorescent Proteins

• 12/12 wwPDB News: PDB Entries with Novel Ligands Now Distributed Only in PDBx/mmCIF and PDBML File Formats

• 12/08 Education Corner: MedChemBlog

• 12/04 Explore the Structural Biology of Health and Nutrition

• 11/30 December 1: World AIDS Day

• 11/30 Access CSMs of Available Model Organisms

• 11/28 Watch the Crash Course: RCSB PDB APIs

• 11/24 Papers Published in Special Issue of Journal of Molecular Biology

• 11/22 wwPDB News: Deprecation of FTP File Download Protocol in the PDB Archive

• 11/18 Nov 18-24: World Antimicrobial Awareness Week

• 11/16 Nov 17: WHO's Cervical Cancer Elimination Day of Action

• 11/15 Meet RCSB PDB at ABRCMS

• 11/14 wwPDB News: Backbone Annotation and Standardization of Peptide Residues is Now Live

• 11/13 November 14 is World Diabetes Day

• 11/07 Molecular Landscapes

• 11/02 Explore Antibiotic Resistance in 3D

• 10/31 Explore the Structural Biology of Viruses

• 10/24 Access Computed Structure Model Annotations

• 10/23 Meet RCSB PDB at SACNAS

• 10/20 Happy Birthday, PDB!

• 10/18 wwPDB News: Poster Prize Awarded at The Protein Society

• 10/15 Happy Birthday, Irving Geis

• 10/11 wwPDB News: Poster Prize Awarded at IUCr

• 10/10 Download PAE JSON Files for AlphaFold Models

• 10/08 Fall Newsletter Published

• 10/05 The Nobel Prize in Physiology or Medicine 2023

• 10/01 Structural Biology and Nobel Prizes

• 09/26 ASBMB Members: Register Now for Virtual Event

• 09/25 Undergrads/Grads: January 2024 Science Communication Boot Camp (Cancelled)

• 09/19 Poster Prize Awarded at ACA 2023

• 09/15 September 19: DNS name changes for PDB archive downloads from RCSB PDB

• 09/14 Register Now for October Virtual Crash Courses on RCSB PDB APIs

• 09/12 Poster Prize Awarded at ISMB 2023

• 09/12 wwPDB News: Coming Soon: PDB Entries with Novel Ligands Distributed Only in PDBx/mmCIF and PDBML File Formats

• 09/11 Take the Tabular Reports Survey and Win

• 09/05 Head Back to School with PDB-101

• 08/29 Turning Global Data into Global Knowledge

• 08/29 Education Corner: Empowering Educators

• 08/23 Create Videos About Structural Science

• 08/16 Meet the RCSB PDB and wwPDB at IUCr

• 08/08 Bragg Your Pattern at IUCr

• 08/01 New Poster Available for Download

• 07/25 wwPDB News: Updated Annotation and Standardization of Peptide Residues

• 07/18 Summer Newsletter Published

• 07/09 wwPDB News: Celebrating 20 Years of the wwPDB

• 07/04 wwPDB News: PDB NextGen Archive Now Provides Intra-molecular Connectivity

• 07/04 Meet the RCSB PDB at ACA

• 07/03 DNS name changes for PDB archive downloads from RCSB PDB starting September 2023

• 06/27 Introducing the Nucleic Acid Knowledgebase

• 06/27 Explore PDB Data Distributions

• 06/19 Explore the Structural Biology of Bioenergy

• 06/19 Toggle to "Opt-in" to Access Computed Structure Models Alongside PDB Data

• 06/13 Guide to Understanding PDB Data: Intro to APIs

• 06/13 Watch the Crash Course: Understanding PDBx/mmCIF

• 06/06 Education Corner: Bragg Your Pattern at IUCr

• 06/06 Search for Structures or Feature Help, News, and PDB-101 articles

• 05/30 Easily Build Advanced Searches

• 05/29 Molecular Landscapes

• 05/23 Prepare Depositions Using New pdb_extract Features

• 05/16 wwPDB News: ls-lR index file to be removed July 12, 2023

• 05/16 Award-Winning Videos on Molecular Mechanisms of Targeted Cancer Therapies

• 05/09 Perform Improved Pairwise Structure Alignments

• 05/09 Education Corner: ACA Literacy Portal

• 05/03 Sequence Clustering Update

• 05/03 Beginner's Guide to PDB Structures and PDBx/mmCIF

• 05/02 Helen Berman Elected to National Academy of Sciences

• 05/01 Vote Now for the Viewer's Choice Award

• 04/30 Register Now for May 3 Virtual Crash Course: Understanding PDBx/mmCIF

• 04/26 Annual Report Published

• 04/25 Search for Structures By Date

• 04/24 wwPDB News: Poster Prize Awarded at #DiscoverBMB

• 04/21 Celebrate DNA Day on April 25

• 04/18 Spring Newsletter Published

• 04/18 Find Structurally Similar Chains and Assemblies

• 04/11 Upload Structure Files to Search the PDB

• 04/03 Using KBase to access PDB Structures and CSMs

• 04/02 wwPDB News: Removal of ls-lR index file from the PDB archive

• 04/02 Register Now for Virtual Crash Course: Understanding PDBx/mmCIF

• 03/28 High School Students: Submit Videos By April 24

• 03/26 wwPDB News: Access Depositions Using ORCiD

• 03/23 Meet RCSB PDB at the #DiscoverBMB Meeting

• 03/20 Search for Structural Motifs

• 03/20 Register Now for Crash Course: Python Scripting for Biochemistry & Molecular Biology (Part 2)

• 03/18 Keeping Up with RCSB PDB News

• 03/12 Brain Awareness Week

• 03/09 wwPDB News: Tribute to Dr. Olga Kennard

• 03/07 New Coloring Page: Myoglobin in a muscle cell

• 03/07 wwPDB News: PDB entries with extended CCD or PDB IDs will be distributed in PDBx/mmCIF format only

• 03/06 SDSC and SingAREN Commit to Improving Data Access

• 02/28 Paper Published: EM Holdings of the PDB

• 02/20 Molecular Landscapes

• 02/16 Meet RCSB PDB at The Biophysical Society Meeting

• 02/14 Congratulations to Shuchismita Dutta

• 02/14 wwPDB News: Small Angle Scattering News

• 02/09 Molecular Valentines

• 02/07 Education Corner: Fundamentals of Biochemistry

• 02/06 wwPDB News: Prototype of PDB NextGen Archive now available

• 02/02 February 4 is World Cancer Day

• 02/01 Explore Even More Computed Structure Models Alongside PDB Data

• 01/31 wwPDB News: Enhanced Collection of Starting Models

• 01/30 wwPDB News: Structure Predictors: Use ModelCIF for Computed Structure Models

• 01/24 Paper Published: Delivering PDB Structures and CSMs at RCSB.org

• 01/19 Winter Newsletter Published

• 01/12 Undergrads: Spend your summer with RCSB PDB

• 01/10 wwPDB News: PDB Reaches a New Milestone: 200,000+ Entries

• 01/03 wwPDB News: Time-stamped Copies of PDB and EMDB Archives