Inclusion of Large Structures in the PDB Archive

12/09

With this week's update, large structures (containing >62 chains and/or 99999 ATOM lines) represented as single files have been fully integrated into the main PDB FTP archive in both PDBx/mmCIF and PDBML formats. Previously, large structures were represented in multiple 'SPLIT' entries, which have now been removed (obsoleted) from the PDB FTP site.

The RCSB PDB website has been updated to support these large combined files. Currently, large structures and the corresponding 'SPLIT' entries are searchable at rcsb.org by PDB ID. The associated 'SPLIT' entries will be removed from the website over the coming weeks, but will be available thereafter as obsoleted entries.

For more details please see the What's New Page.

News Index

• 12/30 Happy Holidays

• 12/23 ADIT To Be Retired for Depositions from X-ray Crystallography

• 12/23 Congratulations to 2014 Poster Prize Winners

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• 12/09 Save References to Mendeley and Endnote

• 12/09 Inclusion of Large Structures in the PDB Archive

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• 11/25 Dr Frank Allen 1944-2014

• 11/25 ADIT To Be Retired for Depositions from X-ray Crystallography

• 11/18 RCSB PDB Software Shared on GitHub

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• 10/28 Membrane Query and Annotation

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• 10/21 Comparison Tool for Exploring Sequence and Structure Alignments

• 10/14 Upcoming Meeting: SACNAS

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• 09/30 Map Structures to Sequences with Protein Feature View

• 09/23 Paper Published: RCSB PDB Mobile

• 09/16 Exploring Structure Quality

• 09/09 Head Back to School with PDB-101

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• 08/26 Poster Prize Awarded at ISMB

• 08/26 Announcement: Meeting on Hybrid Methods

• 08/19 Poster Prize Awarded at IUCr

• 08/12 New Website Release

• 08/05 wwPDB Events at IUCr (August 5-12)

• 07/29 Personalize the RCSB PDB

• 07/22 Explore PDB Structures by Browsing Annotations

• 07/15 RCSB PDB Leadership Transition

• 07/08 Summer Newsletter Published

• 07/01 Quick Tour of Search Results

• 06/24 Depositing Data? Use the wwPDB Deposition & Annotation System

• 06/17 HIV Video Challenge Awards

• 06/10 Poster Prize Awarded at ACA

• 06/10 Papers Published

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• 05/27 RCSB PDB Mobile for iOS and Android

• 05/20 Special Events in Albuquerque at ACA 2014

• 05/20 Art of Science Travels to Paris, France

• 05/13 PDB Reaches 100,000

• 05/13 Molecular Machinery Update

• 05/06 Video Challenge for High School Students

• 04/29 New Website Release

• 04/22 Visit the USA Science and Engineering Festival Expo on April 26 & 27

• 04/22 DNA Day 2014: April 25

• 04/15 Resources for High School Video Challenge

• 04/08 Spring Newsletter Published

• 04/01 Build a Model of GFP

• 04/01 Our Best Wishes to Phil

• 03/25 Learn How to Create Molecular Animations

• 03/25 The Art of Systems Biology and Nanoscience

• 03/18 Visit the San Diego Festival of Science and Engineering on March 22

• 03/11 Author Profiles: Timeline Display of a Researcher's Structures

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• 03/04 Membrane Query and Annotation

• 02/25 Video Challenge for High School Students

• 02/18 Releasing Structures on Hold for Publication

• 02/11 Find PDB Structures with Protein Purification Tags

• 02/04 Tour of Ligand Deposition

• 01/28 Binding Site Visualization

• 01/21 Big Picture on Proteins

• 01/14 RapiData 2014

• 01/14 Teacher Workshop in Boulder, Colorado

• 01/07 Winter Newsletter Published